Supported catalog

Online phylogenetics tools and reproducible analyses

Phylomena uses pinned tool versions and records the settings, commands, inputs, and outputs needed to review an analysis.

  • MAFFT

    v7.505

    Multiple sequence alignment

    Aligns DNA and protein sequences for comparison. Choose automatic alignment or a speed and accuracy preset; Phylomena records the settings, command, input, and result.

    1 citation

    View MAFFT

  • IQ-TREE

    v2.4.0

    Maximum-likelihood tree inference

    Estimates an evolutionary tree from aligned sequences using maximum likelihood, with automatic model selection and UFBoot or SH-aLRT branch support.

    3 citations

    View IQ-TREE

  • BEAST2

    v2.7.8

    Bayesian evolutionary analysis

    Estimates evolutionary relationships, divergence times, and uncertainty from aligned nucleotide data, producing posterior trees and an optional summary tree.

    1 citation

    View BEAST2

  • ASTRAL

    v5.7.8

    Species-tree inference from gene trees

    Combines gene trees from many loci into a species tree while accounting for disagreement among them, with scoring, bootstrap, and outgroup options.

    1 citation

    View ASTRAL

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